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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0116s0046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 266aa MW: 31210.5 Da PI: 6.2672 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.7 | 2.5e-19 | 9 | 99 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ffkv ++ +++ lp+ f + +g+k ++ +l +sg+ W+v+l + + ++ +t+GWk+Fvk+n++++gDf+vF++d+ +ef Kalax.0116s0046.1.p 9 FFKVY--LPEFSADQMKLPRLFKY-YmEGVKSGP--AKLIGLSGEAWRVRL--EHNEEGLCFTEGWKDFVKDNEVETGDFLVFSYDEGMEF- 92 67777..77899999******964.359998777..9999***********..9*******************************987888. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v+++++ Kalax.0116s0046.1.p 93 -RVTIYDH 99 .9988876 PP | |||||||
2 | B3 | 73.6 | 2.3e-23 | 185 | 263 | 13 | 95 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++p +f++eh+++ +++ +++l++e +++W+vk+ k++++yv+t+GW +Fv++n+LkegD+++F+l++ + el+v+ Kalax.0116s0046.1.p 185 ARNMCIPSTFISEHDLSYKKNEKVRLQNEGNKRWSVKV--VKHGCTYVFTAGWPQFVRDNELKEGDICIFELQS--RLELRVH 263 3569**********777778889***************..*******************************865..5555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-23 | 3 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.4E-22 | 4 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.47E-19 | 7 | 98 | No hit | No description |
PROSITE profile | PS50863 | 13.958 | 7 | 100 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-17 | 9 | 100 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-16 | 9 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-23 | 166 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-22 | 168 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.83E-20 | 171 | 263 | No hit | No description |
SMART | SM01019 | 2.6E-12 | 172 | 266 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.565 | 173 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-20 | 181 | 263 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MAEDRWPEFF KVYLPEFSAD QMKLPRLFKY YMEGVKSGPA KLIGLSGEAW RVRLEHNEEG 60 LCFTEGWKDF VKDNEVETGD FLVFSYDEGM EFRVTIYDHT WCEKEAALRA ICSQGLRECE 120 EQNEQQNERE KPVGMAQKCG SLKRKRSGQG LSIPEEMELV EVAESFWSTY PFFVVRLKGY 180 NVRGARNMCI PSTFISEHDL SYKKNEKVRL QNEGNKRWSV KVVKHGCTYV FTAGWPQFVR 240 DNELKEGDIC IFELQSRLEL RVHHRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 3e-14 | 1 | 102 | 3 | 104 | At1g16640 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 3e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0116s0046.1.p |